NeoPredict - Neoantigen Prediction Pipeline

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Pipeline Data Flow

Data Ingestion

Load and validate tumor mutation data (VCF), HLA genotype, and RNA expression matrix

pending

Input Files

Somatic VCF

Required

Variant Call Format file with somatic mutations

HLA Genotype

Required

HLA typing results (4-digit resolution)

RNA Expression

Optional

Gene expression matrix (TPM values)

Required files:

VCFHLA

Data Ingestion

Stage 1 of 8

pending

No patient data loaded

Pipeline Ready

0 / 8 stages

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Execution Log

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